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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23428283_23441851_R

Intron Information:

Intron Rank:
149082
Intron Class:
major
Intron Phase:
Intron Coordinates:
23428283 - 23441851
Intron Length:
13569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.4
0.75
0.8
80.8
31.2
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
61.4
0.35
1.7
75.41
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027702
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031770
23426118 - 23442925
16808