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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23453033_23457913_F

Intron Information:

Intron Rank:
139042
Intron Class:
major
Intron Phase:
Intron Coordinates:
23453033 - 23457913
Intron Length:
4881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.2
0.68
0.7
72.2
32.4
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024871
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037208
23452714 - 23458454
5741
ENSAPLT00000023275
23452714 - 23462526
9813