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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23458034_23462373_F

Intron Information:

Intron Rank:
139043
Intron Class:
major
Intron Phase:
Intron Coordinates:
23458034 - 23462373
Intron Length:
4340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAG
U12 Branch Point Sequence:
TCCTTCCCAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
49.3
-0
1.7
66.4
42.2
Major PPT
84.2
0.77
0.8
78.1
30.7
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
43.7
-0.5
2
54.62
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024871
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023275
23452714 - 23462526
9813