Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23546863_23574601_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23546863 - 23574601

Intron Length:

27739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTTAT

U12 Branch Point Sequence:

TTTTCTTTTTTT

Flanking Amino Acid:

AKAEAETEQQAFSLPDLTEQ

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

1.1

85.6

30.6

Major BPS

58.5

0.21

1.4

51.4

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

34.7

-1.7

2.6

44.5

42.8

Minor BPS

46.2

-0.2

3.6

83.31

38.3

Associated Gene:

Gene:

PIK3R1

Ensembl Gene ID:

ENSAPLG00000004772

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040673

23546100 - 23597417

51318