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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23585955_23589494_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23585955 - 23589494
Intron Length:
3540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATGCTCAACT
Flanking Amino Acid:
GRPFAMHNVQTLPPKPPKPN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.9
0.74
0.8
77.2
30.3
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
64.9
0.55
2
85.42
40.6

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029815
23578401 - 23597417
19017