About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23589598_23590306_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23589598 - 23590306
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCTTTCATT
Flanking Amino Acid:
DAEWYWGDISREEVNEKLRD
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.1
0.61
0.8
74.5
35
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
63
0.49
1.8
82.98
39.3

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040673
23546100 - 23597417
51318
ENSAPLT00000034482
23587747 - 23597417
9671
ENSAPLT00000029815
23578401 - 23597417
19017
ENSAPLT00000004972
23569418 - 23596443
27026