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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23591296_23592312_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23591296 - 23592312
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTAATTTAAAC
Flanking Amino Acid:
LYEDYTRTSQEIQMKRTAIE
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
55.6
0.16
1.6
66.55
38.2

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040673
23546100 - 23597417
51318
ENSAPLT00000034482
23587747 - 23597417
9671
ENSAPLT00000029815
23578401 - 23597417
19017
ENSAPLT00000004972
23569418 - 23596443
27026