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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23592456_23592722_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23592456 - 23592722
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TATAACATACCA
Flanking Amino Acid:
KREGNEKEIQRIMHNYEKLK
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
80.3
0.68
0.9
78.5
35.1
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
46.7
-0.2
2
63.82
41.6

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034482
23587747 - 23597417
9671
ENSAPLT00000029815
23578401 - 23597417
19017
ENSAPLT00000004972
23569418 - 23596443
27026
ENSAPLT00000040673
23546100 - 23597417
51318