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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23592900_23593065_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23592900 - 23593065
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATAATTAATT
Flanking Amino Acid:
QLRKTRDQYLMWLTQKGVRQ
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.5
0.64
1
70.5
44.2
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
59.9
0.39
1.8
76.87
38.9

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034482
23587747 - 23597417
9671
ENSAPLT00000029815
23578401 - 23597417
19017
ENSAPLT00000004972
23569418 - 23596443
27026
ENSAPLT00000040673
23546100 - 23597417
51318