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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23593135_23595431_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23593135 - 23595431
Intron Length:
2297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CATATCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATATCT
Flanking Amino Acid:
NEWLGNENTEDQYSMVDDDE
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
69.7
0.44
1
64.7
41
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
54.5
0.22
2
80.25
41.8

Associated Gene:

Gene:
PIK3R1
Ensembl Gene ID:
ENSAPLG00000004772
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034482
23587747 - 23597417
9671
ENSAPLT00000029815
23578401 - 23597417
19017
ENSAPLT00000004972
23569418 - 23596443
27026
ENSAPLT00000040673
23546100 - 23597417
51318