Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23836222_23838054_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23836222 - 23838054

Intron Length:

1833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TTTTCTTCATTT

Flanking Amino Acid:

QIFYFLCLNLAFTFVELFYG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

90.7

1.01

0.7

19.9

Major PPT

83.3

0.75

0.7

82.1

28.2

Minor 5ss

40.3

-1.1

3.1

56.2

42.2

Minor BPS

62.8

0.48

1.8

83.89

37.6

Associated Gene:

Gene:

SLC30A5

Ensembl Gene ID:

ENSAPLG00000005422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020876

23836084 - 23844477

8394

ENSAPLT00000005675

23836102 - 23845214

9113