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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23842354_23844276_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23842354 - 23844276
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
EKDLHAALEKIQKIDGVISY
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
78.1
36.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
31.5
-2.1
2.8
42.1
44.1
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SLC30A5
Ensembl Gene ID:
ENSAPLG00000005422
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005675
23836102 - 23845214
9113