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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23844406_23845043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23844406 - 23845043
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTAGCCATGATG
Flanking Amino Acid:
DVMEQRIVQQVTAILKDAGV
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.7
0.67
0.9
78.2
39.8
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
50.4
-0.1
1.8
60.08
42.1

Associated Gene:

Gene:
SLC30A5
Ensembl Gene ID:
ENSAPLG00000005422
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005675
23836102 - 23845214
9113