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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23852599_23852863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23852599 - 23852863
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
GTCTACGAAATA
Flanking Amino Acid:
LSRAIIEFQKETRDIEDKVN
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
71.3
0.53
1
61.3
37
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
43.2
-0.5
2.3
56.44
43.2

Associated Gene:

Gene:
CENPH
Ensembl Gene ID:
ENSAPLG00000021827
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019083
23848463 - 23854642
6180