About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23863076_23864560_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23863076 - 23864560
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
QELSHTNIIGLIDAFGHKSN
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CDK7
Ensembl Gene ID:
ENSAPLG00000005769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040414
23859795 - 23886697
26903
ENSAPLT00000028301
23859795 - 23886697
26903
ENSAPLT00000005987
23859795 - 23878166
18372