About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23868668_23870590_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23868668 - 23870590
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TGTTGTATAATT
Flanking Amino Acid:
GCILAELLLRVPFLPGDSDL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
79.8
0.67
0.8
73.6
37
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
54.2
0.21
2
77.32
39.6

Associated Gene:

Gene:
CDK7
Ensembl Gene ID:
ENSAPLG00000005769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040414
23859795 - 23886697
26903
ENSAPLT00000028301
23859795 - 23886697
26903
ENSAPLT00000005987
23859795 - 23878166
18372