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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23870678_23873466_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23870678 - 23873466
Intron Length:
2789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATACTTGCATC
Flanking Amino Acid:
LGTPTEEQWPDMTSLPDYVT
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
37.6
-1.4
3.2
60.2
44.1
Minor BPS
45.5
-0.3
1.8
55.52
36.6

Associated Gene:

Gene:
CDK7
Ensembl Gene ID:
ENSAPLG00000005769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005987
23859795 - 23878166
18372
ENSAPLT00000040414
23859795 - 23886697
26903
ENSAPLT00000028301
23859795 - 23886697
26903