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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23878903_23901145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
23878903 - 23901145
Intron Length:
22243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCAT
5'SS Class:
major
3'SS Sequence:
TCTTCCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TGATGATAGAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
65.3
42.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
34.6
-1.8
3.2
48.3
47.3
Minor BPS
38.8
-0.8
2.4
57.52
45.1

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043741
23877952 - 23922462
44511