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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23897552_23901145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23897552 - 23901145
Intron Length:
3594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TGATGATAGAGT
Flanking Amino Acid:
RCAVFLGRAQLACCCGTAAC
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
38.8
-0.8
2.4
57.52
45.1

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048391
23897495 - 23922462
24968