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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23901314_23908219_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23901314 - 23908219
Intron Length:
6906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCCTGCCTAACA
Flanking Amino Acid:
TTVANEMKARIPFYEQMCKG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.8
43.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
52.8
0.08
2.1
67.55
44.9

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048391
23897495 - 23922462
24968
ENSAPLT00000043741
23877952 - 23922462
44511
ENSAPLT00000006027
23889640 - 23922462
32823