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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23908399_23908672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23908399 - 23908672
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCTTGGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATCAGAT
Flanking Amino Acid:
SKSCRAYIHNGFWFIKLLLL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
77.8
38.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73
0.52
1.1
68.7
42
Minor 5ss
34.4
-1.8
3.2
42.1
44.8
Minor BPS
42.6
-0.4
2.1
65.58
43.7

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048391
23897495 - 23922462
24968
ENSAPLT00000043741
23877952 - 23922462
44511
ENSAPLT00000006027
23889640 - 23922462
32823