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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23916942_23918541_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23916942 - 23918541
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATTCTGACTC
Flanking Amino Acid:
TILFGCILYSCLTSTTRASS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.3
0.52
0.8
65.4
36.2
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
49.5
-0
1.7
60.43
38.8

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048391
23897495 - 23922462
24968
ENSAPLT00000043741
23877952 - 23922462
44511
ENSAPLT00000006027
23889640 - 23922462
32823