About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23921116_23921786_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23921116 - 23921786
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
CTGTCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATTTACAAAAGT
Flanking Amino Acid:
CCFCCVPDGDADAEEHTEKR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.3
34
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
79.2
0.66
0.8
77.4
31.3
Minor 5ss
36.2
-1.6
2.6
40.8
40
Minor BPS
45.9
-0.2
2.3
72.37
44.1

Associated Gene:

Gene:
SERINC5
Ensembl Gene ID:
ENSAPLG00000005798
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048391
23897495 - 23922462
24968
ENSAPLT00000043741
23877952 - 23922462
44511
ENSAPLT00000006027
23889640 - 23922462
32823