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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23937724_23938019_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23937724 - 23938019
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CTGCTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGAAT
U12 Branch Point Sequence:
ACACCATGAATC
Flanking Amino Acid:
VPNPGQEDDNGDGVGDICES
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
54.5
0.11
1.4
65.3
38.6
Major PPT
68.3
0.41
1
61.2
39.3
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
47.3
-0.2
1.7
53.69
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035377
23935197 - 23970097
34901
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938