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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23938214_23940393_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23938214 - 23940393
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TCCGTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCCAG
U12 Branch Point Sequence:
TTCTCTTTGTCT
Flanking Amino Acid:
VGDSCDTNQDSDGDGHQDST
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
41.9
-0.5
1.6
49.9
45.3
Major PPT
75.5
0.57
0.9
68.5
37.3
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
48.5
-0
3.5
82.51
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035377
23935197 - 23970097
34901
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938