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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23942224_23943744_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23942224 - 23943744
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGTGC
5'SS Class:
major
3'SS Sequence:
CTATGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCATTCCTAATT
Flanking Amino Acid:
ADGDGIPNDQDNCVLTPNVN
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
53.9
40.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.4
0.66
0.9
73.1
37
Minor 5ss
30.6
-2.2
3.4
41.7
45
Minor BPS
62.4
0.47
1.7
76.93
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035377
23935197 - 23970097
34901
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938