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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23944162_23945572_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23944162 - 23945572
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
GTTTTATTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTGATA
Flanking Amino Acid:
EERRGEVTCICGIGWAGDGY
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.5
31.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.8
0.51
1
69.6
40.7
Minor 5ss
37.6
-1.4
2.9
47.5
42.3
Minor BPS
60.6
0.33
1.6
71.66
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035377
23935197 - 23970097
34901
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938