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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23948543_23949155_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23948543 - 23949155
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTTGCTATATGT
Flanking Amino Acid:
GLSYAKSNKQICLDIDECQN
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
71.4
0.48
1
65.8
45.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
46.5
-0.1
2.2
72.16
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938
ENSAPLT00000035377
23935197 - 23970097
34901