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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23952478_23953851_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23952478 - 23953851
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTGCTTTAAAG
Flanking Amino Acid:
RNTLAECQACGLGTVNFPTP
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.2
0.63
1
78.7
33.7
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
67.8
0.42
1.6
72.3
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035377
23935197 - 23970097
34901
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938