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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23965287_23969724_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23965287 - 23969724
Intron Length:
4438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTATTTAAGC
Flanking Amino Acid:
PGRAAPPAPRVIDLLSYSNK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
59.5
0.28
1.8
70.8
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032913
23932358 - 23970097
37740
ENSAPLT00000006449
23931160 - 23970097
38938
ENSAPLT00000035377
23935197 - 23970097
34901