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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23977636_23979178_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23977636 - 23979178
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
AKILNFLRKQKYNADYELSA
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.5
0.9
65.9
39.6
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
MTX3
Ensembl Gene ID:
ENSAPLG00000006896
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034692
23975373 - 23982696
7324
ENSAPLT00000022654
23975198 - 23982696
7499
ENSAPLT00000022034
23975198 - 23983580
8383
ENSAPLT00000007156
23975198 - 23983580
8383