Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23979272_23979985_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23979272 - 23979985

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATACT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTGATGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

ATTCCAGTGATA

Flanking Amino Acid:

LLEEKLLPALLHTFWVEAEN

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

0.9

79.5

33.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

67.7

0.4

62.6

43.4

Minor 5ss

37.9

-1.4

2.9

49.2

Minor BPS

-0.3

2.2

63.26

36.7

Associated Gene:

Gene:

MTX3

Ensembl Gene ID:

ENSAPLG00000006896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022654

23975198 - 23982696

7499

ENSAPLT00000022034

23975198 - 23983580

8383

ENSAPLT00000007156

23975198 - 23983580

8383

ENSAPLT00000034692

23975373 - 23982696

7324