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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23980169_23980321_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23980169 - 23980321
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAT
U12 Branch Point Sequence:
TGTGTCTCATCA
Flanking Amino Acid:
LYSLSEVEAQIYRDAKECLN
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
59.1
0.23
1.4
60.7
45.9
Major PPT
72.9
0.52
1
71.2
39.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
48.9
-0
1.9
63.83
42.6

Associated Gene:

Gene:
MTX3
Ensembl Gene ID:
ENSAPLG00000006896
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007156
23975198 - 23983580
8383
ENSAPLT00000034692
23975373 - 23982696
7324
ENSAPLT00000022654
23975198 - 23982696
7499
ENSAPLT00000022034
23975198 - 23983580
8383