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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24011142_24014086_F

Intron Information:

Intron Rank:
149629
Intron Class:
major
Intron Phase:
Intron Coordinates:
24011142 - 24014086
Intron Length:
2945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAATGGA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCACAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CTTTTGTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
61.8
39
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
66.5
0.37
1.1
66.1
40
Minor 5ss
25.5
-2.8
3
22.7
37.4
Minor BPS
43.8
-0.4
2.5
62.43
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030521
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019892
24011024 - 24018283
7260