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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24067113_24067806_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24067113 - 24067806
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATTT
Flanking Amino Acid:
DIESLFNSVEENCKKNAELL
Intron Amino Acid Position:
3692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.6
0.6
1
76.4
37.3
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
55.6
0.25
1.8
75.42
42

Associated Gene:

Gene:
CMYA5
Ensembl Gene ID:
ENSAPLG00000023658
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038322
24043464 - 24089365
45902
ENSAPLT00000027519
24063112 - 24089365
26254
ENSAPLT00000024273
24058622 - 24089365
30744
ENSAPLT00000021664
24043464 - 24089365
45902