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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24067903_24070072_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24067903 - 24070072
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACATACTTAATC
Flanking Amino Acid:
TLDDAATKMKDQLGELLKAL
Intron Amino Acid Position:
3660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
64.3
0.43
1.5
66.71
38.8

Associated Gene:

Gene:
CMYA5
Ensembl Gene ID:
ENSAPLG00000023658
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021664
24043464 - 24089365
45902
ENSAPLT00000038322
24043464 - 24089365
45902
ENSAPLT00000027519
24063112 - 24089365
26254
ENSAPLT00000024273
24058622 - 24089365
30744