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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24081430_24088266_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24081430 - 24088266
Intron Length:
6837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
DPEEAEELSNSLKDLIQSED
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
CMYA5
Ensembl Gene ID:
ENSAPLG00000023658
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024273
24058622 - 24089365
30744
ENSAPLT00000021664
24043464 - 24089365
45902
ENSAPLT00000038322
24043464 - 24089365
45902
ENSAPLT00000027519
24063112 - 24089365
26254