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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24100581_24105281_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24100581 - 24105281
Intron Length:
4701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
AGGTCTGCAAAT
Flanking Amino Acid:
GFFKYYAMEFDWSHQMISVR
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
86.9
0.83
0.7
80.6
31.5
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
43.7
-0.4
2.2
60.57
42.9

Associated Gene:

Gene:
TENT2
Ensembl Gene ID:
ENSAPLG00000007600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007921
24094059 - 24131822
37764