About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24105419_24110587_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24105419 - 24110587
Intron Length:
5169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTATTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACTCTCTAATT
Flanking Amino Acid:
ILPSLQKNYPELFDPAMQLH
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.7
0.76
0.9
84.7
35.8
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
63.1
0.49
1.7
77.53
39.3

Associated Gene:

Gene:
TENT2
Ensembl Gene ID:
ENSAPLG00000007600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007921
24094059 - 24131822
37764