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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24110632_24114577_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24110632 - 24114577
Intron Length:
3946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
LVLMVLHYLQTLPEPILPSL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
TENT2
Ensembl Gene ID:
ENSAPLG00000007600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007921
24094059 - 24131822
37764