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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24114707_24117070_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24114707 - 24117070
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
ATTTTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
NTFLLRTYAYIEKRVRPLVL
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
81.2
34.8
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
TENT2
Ensembl Gene ID:
ENSAPLG00000007600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007921
24094059 - 24131822
37764