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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24130536_24130849_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24130536 - 24130849
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTACGAACTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CATGAATTAACT
Flanking Amino Acid:
TEAQVNIQNAVLSRALLNAN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
63.6
0.31
1
55.9
38.9
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
52.2
0.15
1.9
71.45
44.8

Associated Gene:

Gene:
TENT2
Ensembl Gene ID:
ENSAPLG00000007600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007921
24094059 - 24131822
37764