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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24155986_24176864_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24155986 - 24176864
Intron Length:
20879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGACTTTTACT
Flanking Amino Acid:
MGEQPIFSTRA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.5
0.82
0.7
84.6
30.3
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
59.8
0.39
1.7
74.86
41.8

Associated Gene:

Gene:
HOMER1
Ensembl Gene ID:
ENSAPLG00000007877
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008185
24155147 - 24240361
85215