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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24177022_24184126_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24177022 - 24184126
Intron Length:
7105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
ACTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACT
Flanking Amino Acid:
YRIISLDGSKAIINSTITPN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
81.2
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.1
0.9
0.7
88.4
27.9
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
73.6
0.82
1.6
90.89
33.1

Associated Gene:

Gene:
HOMER1
Ensembl Gene ID:
ENSAPLG00000007877
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008185
24155147 - 24240361
85215