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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24196160_24220216_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24196160 - 24220216
Intron Length:
24057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGATT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AGTCTCTGACCA
Flanking Amino Acid:
PTQNALPFTHSSTISKHWEA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
76
39.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
36.5
-1.5
3.6
57
47.3
Minor BPS
48.8
-0
1.7
60.84
38.6

Associated Gene:

Gene:
HOMER1
Ensembl Gene ID:
ENSAPLG00000007877
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008185
24155147 - 24240361
85215