Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24234007_24235486_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24234007 - 24235486

Intron Length:

1480

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTTGCT

5'SS Class:

major

3'SS Sequence:

TCTTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TGTTGCTAAAAA

Flanking Amino Acid:

LESTLKKKEEEIERLKQEID

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

73.4

35.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

87.3

0.84

0.6

85.2

22.3

Minor 5ss

41.5

-0.9

3.1

59.5

Minor BPS

0.03

2.2

69.33

42.7

Associated Gene:

Gene:

HOMER1

Ensembl Gene ID:

ENSAPLG00000007877

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008185

24155147 - 24240361

85215