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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24235568_24239507_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24235568 - 24239507

Intron Length:

3940

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTAT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

AACGCATTAACA

Flanking Amino Acid:

QRDSLTQKLQEVEIRNKDLE

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

80.1

30.7

Major BPS

0.52

1.1

77.7

35.3

Major PPT

75.7

0.58

76.6

31.7

Minor 5ss

40.1

-1.1

3.1

49.2

Minor BPS

57.1

0.22

1.7

64.22

41.8

Associated Gene:

Gene:

HOMER1

Ensembl Gene ID:

ENSAPLG00000007877

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008185

24155147 - 24240361

85215