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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24273666_24277871_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24273666 - 24277871
Intron Length:
4206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTAT
5'SS Class:
major
3'SS Sequence:
ATTTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACATTTTTAAAA
Flanking Amino Acid:
QLESIRRLMSEKRDEVVYYD
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
73.1
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
35.4
-1.7
3.1
49.3
46.9
Minor BPS
60.4
0.32
1.3
63.16
37

Associated Gene:

Gene:
JMY
Ensembl Gene ID:
ENSAPLG00000008348
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040757
24255350 - 24320665
65316
ENSAPLT00000008699
24237350 - 24320665
83316