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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24287847_24289941_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24287847 - 24289941
Intron Length:
2095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTATT
5'SS Class:
major
3'SS Sequence:
TCCCCTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AGCTTTCTACTT
Flanking Amino Acid:
YFEITAKAQKAVYDRMRADQ
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
83.7
34.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
77.2
0.61
0.7
72.7
25.5
Minor 5ss
40.3
-1.1
3.2
59.8
44.7
Minor BPS
44.7
-0.3
1.8
58.56
39.4

Associated Gene:

Gene:
JMY
Ensembl Gene ID:
ENSAPLG00000008348
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008699
24237350 - 24320665
83316
ENSAPLT00000040757
24255350 - 24320665
65316