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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24290093_24301221_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24290093 - 24301221
Intron Length:
11129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTTGTTAATT
Flanking Amino Acid:
LAMLRRQQIKISIANDYLGP
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.5
0.71
0.9
78
40.1
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
59.7
0.38
2
77.35
39.9

Associated Gene:

Gene:
JMY
Ensembl Gene ID:
ENSAPLG00000008348
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040757
24255350 - 24320665
65316
ENSAPLT00000008699
24237350 - 24320665
83316